PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111726001
Common NameGSBRNA2T00111726001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 71aa    MW: 7731.49 Da    PI: 11.0767
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111726001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA141.32e-44270270
                 S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         +++k+e+kGlnPGlivllv+ggll+ flvgn+ily+yaqknlPPrkkkPvskkk+k+eklkqGv+vPGe
  GSBRNA2T00111726001  2 KQGKIESKGLNPGLIVLLVIGGLLVAFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKLKQGVQVPGE 70
                         5789****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.8E-39670IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MKQGKIESKG LNPGLIVLLV IGGLLVAFLV GNFILYTYAQ KNLPPRKKKP VSKKKMKKEK  60
LKQGVQVPGE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111726001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893941e-106AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146906.12e-38PREDICTED: DNA-binding protein S1FA3
RefseqXP_006298914.12e-38hypothetical protein CARUB_v10015035mg
SwissprotQ423371e-18S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078CG825e-41A0A078CG82_BRANA; BnaA03g30540D protein
STRINGBra029784.1-P6e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.12e-06S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]